Package: moultmcmc 0.1.0.9001

moultmcmc: Bayesian Inference for Avian Moult Phenology Models

Precompiled Stan models to conduct full Bayesian inference in regression models for the phenology of avian primary moult based on the approach of Underhill & Zucchini (1988) <doi:10.1111/j.1474-919X.1988.tb00993.x> and related hierarchical models to accommodate repeated-measures data (within-season recaptures of individuals).

Authors:Philipp Boersch-Supan [aut, cre]

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manual.pdf |manual.html✨
card.svg |card.png
moultmcmc/json (API)

# Install 'moultmcmc' in R:
install.packages('moultmcmc', repos = c('https://pboesu.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/pboesu/moultmcmc/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • recaptures - Simulated moult scores for 235 individuals with no heterogeneity in duration
  • recaptures2 - Simulated moult scores for 235 individuals with heterogeneity in durations
  • siskins - Moult records of Eurasian Siskins
  • weavers_processed - Moult records of Southern Masked Weavers

On CRAN:

Conda:

cpp

4.67 score 4 stars 1 packages 26 scripts 8 exports 60 dependencies

Last updated from:fe46a53efa. Checks:11 NOTE, 1 OK, 1 FAIL. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64NOTE774
linux-devel-x86_64NOTE775
source / vignettesOK1337
linux-release-arm64NOTE798
linux-release-x86_64NOTE787
macos-release-arm64NOTE972
macos-release-x86_64NOTE1088
macos-oldrel-arm64NOTE1458
macos-oldrel-x86_64NOTE1416
windows-develNOTE1194
windows-releaseNOTE1173
windows-oldrelNOTE1293
wasm-releaseFAIL170

Exports:compare_plotconsolidate_moult_recordsfixefmoult_plotmoultmcmcranefresidual_plotsummary_table

Dependencies:abindbackportsBHcallrcheckmateclicowplotcpp11descdistributionaldplyrfarverFormulagenericsggplot2gluegridExtragtableinlineisobandlabelinglatticelifecycleloomagrittrMASSMatrixmatrixStatsmoultnlmenumDerivpillarpkgbuildpkgconfigposteriorprocessxpspurrrQuickJSRR6RColorBrewerRcppRcppEigenRcppParallelrlangrstanrstantoolsS7scalesStanHeadersstringistringrtensorAtibbletidyrtidyselectutf8vctrsviridisLitewithr

Extended moult models

Rendered fromextended-moult-models.Rmdusingknitr::rmarkdownon May 21 2026.

Last update: 2023-01-06
Started: 2022-10-12

Getting started with moultmcmc

Rendered fromgetting-started.Rmdusingknitr::rmarkdownon May 21 2026.

Last update: 2022-12-14
Started: 2021-06-04

Moult data likelihoods and model priors

Rendered frommoult-likelihoods.Rmdusingknitr::rmarkdownon May 21 2026.

Last update: 2022-12-14
Started: 2021-06-03