Package: moultmcmc 0.1.0

moultmcmc: Bayesian Inference for Avian Moult Phenology Models

Precompiled Stan models to conduct full Bayesian inference in regression models for the phenology of avian primary moult based on the approach of Underhill & Zucchini (1988) <doi:10.1111/j.1474-919X.1988.tb00993.x> and related hierarchical models to accommodate repeated-measures data (within-season recaptures of individuals).

Authors:Philipp Boersch-Supan [aut, cre]

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moultmcmc.pdf |moultmcmc.html✨
moultmcmc/json (API)

# Install 'moultmcmc' in R:
install.packages('moultmcmc', repos = c('https://pboesu.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/pboesu/moultmcmc/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • recaptures - Simulated moult scores for 235 individuals with no heterogeneity in duration
  • recaptures2 - Simulated moult scores for 235 individuals with heterogeneity in durations
  • siskins - Moult records of Eurasian Siskins
  • weavers_processed - Moult records of Southern Masked Weavers

On CRAN:

cpp

4.67 score 4 stars 1 packages 26 scripts 8 exports 63 dependencies

Last updated 2 years agofrom:0a343e0589. Checks:1 OK, 8 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 24 2025
R-4.5-win-x86_64WARNINGJan 24 2025
R-4.5-linux-x86_64WARNINGJan 24 2025
R-4.4-win-x86_64WARNINGJan 24 2025
R-4.4-mac-x86_64WARNINGJan 24 2025
R-4.4-mac-aarch64WARNINGJan 24 2025
R-4.3-win-x86_64WARNINGJan 24 2025
R-4.3-mac-x86_64WARNINGJan 24 2025
R-4.3-mac-aarch64WARNINGJan 24 2025

Exports:compare_plotconsolidate_moult_recordsfixefmoult_plotmoultmcmcranefresidual_plotsummary_table

Dependencies:abindbackportsBHcallrcheckmateclicolorspacecowplotcpp11descdistributionaldplyrfansifarverFormulagenericsggplot2gluegridExtragtableinlineisobandlabelinglatticelifecycleloomagrittrMASSMatrixmatrixStatsmgcvmoultmunsellnlmenumDerivpillarpkgbuildpkgconfigposteriorprocessxpspurrrQuickJSRR6RColorBrewerRcppRcppEigenRcppParallelrlangrstanrstantoolsscalesStanHeadersstringistringrtensorAtibbletidyrtidyselectutf8vctrsviridisLitewithr

Extended moult models

Rendered fromextended-moult-models.Rmdusingknitr::rmarkdownon Jan 24 2025.

Last update: 2023-01-06
Started: 2022-10-12

Getting started with moultmcmc

Rendered fromgetting-started.Rmdusingknitr::rmarkdownon Jan 24 2025.

Last update: 2022-12-14
Started: 2021-06-04

Moult data likelihoods and model priors

Rendered frommoult-likelihoods.Rmdusingknitr::rmarkdownon Jan 24 2025.

Last update: 2022-12-14
Started: 2021-06-03