moultmcmc: Bayesian inference for moult phenology models

Introduction

The moultmcmc package implements a Bayesian inference framework for models of avian primary moult data.

moultmcmcExtra implements further model extensions, which are currently outside the scope of moultmcmc.

Installation

The package moultmcmcExtra is built around pre-compiled Stan models, the easiest and quickest way of installing it is to install the package from R-universe use the following code:

install.packages("moultmcmcExtra", repos = "https://pboesu.r-universe.dev")

On Mac and Windows systems this will make use of pre-compiled binaries, which means the models can be run without having to install a C++ compiler. On Linux this will install the package from a source tarball. Because of the way the Stan models are currently structured, compilation from source can be a lengthy process (several minutes), depending on system setup and compiler toolchain.

To install moultmcmcExtra from the github source (not generally recommended for Windows users) use the following code. This requires a working C++ compiler and a working installation of rstan:

#not generally recommended for Windows/MacOS users
install.packages("remotes")
remotes::install_github("pboesu/moultmcmcExtra")